Scaffold Ga0211637_10003313

Overview

Basic Information

• Taxon OID: 3300020398
• Scaffold ID: Ga0211637_10003313
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7597
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1719
  • Long. (^o): -129.6713
  • Depth (m): 696

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F022428	Metagenome	214	Y
F026289	Metagenome	198	Y
F027540	Metagenome / Metatranscriptome	194	Y
F040141	Metagenome	162	Y
F089026	Metagenome	109	Y
F103065	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211637_100033131	F027540	GAGG	MSSFRSQPGFKPALIKPTYDVANYGHDIVLPLNCLSGSTVTLTPSTATFVQVLEDSRVPIDEVDLFITDSDKMAMVHAGNDTDYDESWEWRPDMSAQAYLVSFNFAVGMKVSAYTSGNFKISDVQVIMKQIGGGEGDFVYLDKVIVPGMTNMAGVAEQVAIINFSTTVSAKVFDKPLTFQ
Ga0211637_1000331310	F040141	N/A	MRCKSHFFIFKTDKCMKGAYIFMQKTSICYFCVRYLKKRYGYTEEILLKDDFYKKFISSDKDFLQTIHNF
Ga0211637_1000331314	F103065	AGGAG	MITTSLFKVGDIVKIVSNHKPFSRGITSKYPHYKQKENIGLVCFVERVVGNDRYSLYALEQPVKPCPEKCNHDLCKGVDELGNSINCEWYYGDTLESCLEPCSIKCEDCNDLINKMPLEAIRQYKHFIYPDDKKIILSIIENQEDLT
Ga0211637_1000331316	F089026	GAGG	MTKYKTIKNRFITEFIEKYSDYSNRHFIQVMKQWRDFEK
Ga0211637_100033132	F008596	GGAG	MSGAWDIATATSIGTGTSKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVPPIQSGLGTTIVQVNPLLEAYECGTGLQEGATSQFIISGTNQVAPTVATNLACALHYSTSPPNRPEHFYHKPDDETGSITTATTTTGNSFTINDGMWLEDMYVSAFTAVYTVSQSLAGYGSFSSNDFGNSLPLKVPIQPGCASLGATGTQATLALASYHNTHMPMKTSCKINTAFTNDITSTGNISFIMGVGYTKQ
Ga0211637_100033133	F003270	N/A	MAKKRRRRKNKNGKHKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNATTEYRSLDYLGKLKVASNILTGSLTGRVLFSDQYNPSPSGQPRINPAGIINKWTGIGVAGKIYGVIGKSMKLPESATIDRIGSKLIFGGGIGGFFDPPSAQGRISTYAVTPNVMVQNRSQTDRSYAVARRNRGFVPLDSFDYSTGSAFRR
Ga0211637_100033134	F008691	N/A	MPLGYDVKEEATEVKKNLFENRDSFIMLVVAGVVGGIVTRFVVPKSITEGTIFDRLKYWFGYDQEEEED
Ga0211637_100033135	F026289	AGGTGG	MSLKEERKPKAKNEDEAFIDELRGMLDQPHKDLIWNEKFKDLVRKYFDI
Ga0211637_100033139	F022428	AGG	MFLGLLRGLVIPKVKTLPGKVENTIFVMSLMWKVANSKELGFQPLRQFTTKLRLFSD