Scaffold Ga0211583_10070568

Overview

Basic Information

• Taxon OID: 3300020397
• Scaffold ID: Ga0211583_10070568
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052433	Metagenome	142	Y
F073751	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211583_100705681	F052433	N/A	MDLDIYYPYNIPFFTDKKFIDVKFVNNDDHYINIYFVDNNKLGKLAGIVFPHTERKYRFPENSIVAIITQEKPHKYQCFIKLMDGMTYIYP
Ga0211583_100705683	F073751	AGG	MVQNNIKWNLTSEKCFEIIHLTLIDILTESKDFTKNINDLIRMLNSRTKIYKLHDSRKYNSFSKYLKIEYNGFLNFIEDYNFYDVIRGDKDISIKLYKNLVNLDDLKYSGKRLTKDSEWIIINN