Scaffold Ga0211583_10064374

Overview

Basic Information

• Taxon OID: 3300020397
• Scaffold ID: Ga0211583_10064374
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211583_100643742	F022555	AGGAG	MAIAPKFKPGQLVKYNHPANPLVGLVKSVKDYSVGPTLVLVQWCGKYRQQEEYIPQSDLKLVESV
Ga0211583_100643743	F006383	GGAGG	MLVKDKMWKVQQPGTILRARHSARRGQLALVLARSYAGPRPTNGYPPRRYVPMQWLSSGERFEEMLVNANNCFDIVSSCDTLGAEEN
Ga0211583_100643746	F015346	GAGG	MNPEWKRYKVGDLVGVASNRVLGIITKSNYWALDEYLGGEIECVDVMFGDSVSQQYPVQYLVEMK
Ga0211583_100643747	F063682	N/A	TSIDHMSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGETVFVHKSHLTTRMY