Scaffold Ga0211687_10052595

Overview

Basic Information

• Taxon OID: 3300020396
• Scaffold ID: Ga0211687_10052595
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1821
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071643	Metagenome	122	Y
F087751	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211687_100525956	F087751	AGGAG	MSIFKKKNDALQNANKMTGDEVIETYARLNLYQKAALLRLLVRDVIFNVNNEEVSGLNFTDIKVDGAIIVANEE
Ga0211687_100525957	F071643	N/A	MYWSSEASNFNTHAERVQFLKDNGITNLQRIDTILHLAVSFLPSRMYKLPRKLIIAAWRDLPNDTARTMFAIGIKSIKRKGST