NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211705_10044851

Scaffold Ga0211705_10044851


Overview

Basic Information
Taxon OID3300020395 Open in IMG/M
Scaffold IDGa0211705_10044851 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7006Long. (o)-17.9915Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042559Metagenome / Metatranscriptome158Y
F073649Metagenome / Metatranscriptome120Y
F080483Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211705_100448512F073649N/AMQITDEFQVTLTSTEYDLLSEVMSFSYSMDFEEHNDESLFNRVWDKISNADHNIKFEEAN
Ga0211705_100448513F042559AGGAGGMSVITEFYSGLLDKGYTEREIRESCKRHQERVAPDWFNGTYQEYIESMHDFLNGI
Ga0211705_100448515F080483N/AMMSYNTDFVEARADDIFDGWVTQFFRDLTPTDESALYSLAL

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