Scaffold Ga0211705_10023667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211705_10023667

Scaffold Ga0211705_10023667

Overview

Basic Information
Taxon OID	3300020395 Open in IMG/M
Scaffold ID	Ga0211705_10023667 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2240
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_072
Coordinates	Lat. (^o)	-8.7006	Long. (^o)	-17.9915	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036279	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211705_100236672	F036279	AGG	MKGTKHILKIVFIIFSFVSITACSVPFANGMNGKDIIKIANAGKNIKNITKEGINEELITETKNILRDIQYGGKAQR

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