NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211705_10003024

Scaffold Ga0211705_10003024


Overview

Basic Information
Taxon OID3300020395 Open in IMG/M
Scaffold IDGa0211705_10003024 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6937
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7006Long. (o)-17.9915Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010536Metagenome / Metatranscriptome302N
F026571Metagenome / Metatranscriptome197N
F036728Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0211705_1000302410F026571AGGMKKYRVNVVGTKYITTDTEDKAIKLTEDMLDHIHKSLNMQVFSIAEVKAEEE
Ga0211705_1000302413F036728N/AMVLKQKIELPLDCRYIFVNYNKTLKPFGSTKEVLHFIEGNRLEIVDQQTFNQSYVVVVKKADSFL
Ga0211705_100030244F010536AGGAGMIDVMLSKATTGMLIAELLGRKDDKDQPLFMGKSIILSNGQIQLLAILPNVQVLTTVEEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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