Scaffold Ga0211497_10128503

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211497_10128503

Scaffold Ga0211497_10128503

Overview

Basic Information
Taxon OID	3300020394 Open in IMG/M
Scaffold ID	Ga0211497_10128503 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1004
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_058
Coordinates	Lat. (^o)	-17.5656	Long. (^o)	42.1988	Alt. (m)		Depth (m)	66
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081427	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_101285033	F081427	GAGG	MYIHNNPQLTAYHTMQTEQKRLLTKERLERYHNTLDRVEKQMLEDYNKRVERMREVSVTPKTGPEIRRHIDIYA

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