Scaffold Ga0211497_10073615

Overview

Basic Information

• Taxon OID: 3300020394
• Scaffold ID: Ga0211497_10073615
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_058
• Coordinates
  • Lat. (^o): -17.5656
  • Long. (^o): 42.1988
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_100736153	F013522	GGA	MTKENILKRIEQLSKLCEETEPTFNEMMNMDKLFTQDLISVDNMYLQVKQDEYSPNDLIDIMKECNWIWKKRNKIKEVGWNEYNNIDRKIEEAVRAGRKIEAIKTYRKHKIDNGEDCGLKEAKVYIDKVSIKLGLD
Ga0211497_100736154	F002249	N/A	QATKVPQAFMKYKSYPYTVPINHKALQHTKIKELQVRMMKWVSWYKDEKIRNRTVDKDKWQHRFQFTLRCQERAGKLTKGELQQLNHYWKVYDEGKHT