Scaffold Ga0211497_10007949

Overview

Basic Information

• Taxon OID: 3300020394
• Scaffold ID: Ga0211497_10007949
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6209
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_058
• Coordinates
  • Lat. (^o): -17.5656
  • Long. (^o): 42.1988
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F059330	Metagenome	134	N
F085559	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_1000794911	F002747	AGG	MAKDQRFYVNACIEIYVPDQGYGEKAMKNEQTDAEWFANEVASQIPKAINKNFKFSERPYSVNDVMVGKVERS
Ga0211497_100079497	F085559	AGGAG	MTMNLQQQSDECGYALEAFAKVLKNNNIEAVGKPHIELIMEYQKEYKKIEIRNQRIQNEMNYNFVQSEKTEAYREWENSWINWSKKKNEH
Ga0211497_100079499	F059330	N/A	MTDKQIIEQTKDWLWELTEPREEFSGFGICPFLKKELTNDDMKFVILRGQDNSYGPNFKKGLDDWIKENKYNSILFICLGEIWEHIERKDYQLKLQNLMKNNGYEDYKALCFSPYEDRTAAGVKTRAGSPYFLINIMSSTDLGKAHQSIVKTKYFDNFTKQELIDIKIYGKNTKKALDINKNN