Scaffold Ga0211497_10005776

Overview

Basic Information

• Taxon OID: 3300020394
• Scaffold ID: Ga0211497_10005776
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7559
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_058
• Coordinates
  • Lat. (^o): -17.5656
  • Long. (^o): 42.1988
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F044198	Metagenome	155	N
F051059	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_1000577614	F051059	AGGAG	MYYSLDIYSKATKKMLAYHSSDSRKDMLHLKKMYAKNNFVYIKECFGDTDEDKHNYRQSDKYKSS
Ga0211497_1000577615	F012529	AGGAG	MLEDKTYKVKVADYHDAVIYVYMRHVECLNPDEEDAEKKKWKHWKEIVTVIPVCDGSDDYQDKSGNFHNNIRVTVDALSELYGNSPDYEMGISYTMNTHQYINV
Ga0211497_1000577622	F020815	N/A	MRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTSSIDAAAEEVIENKPKPSGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADAQKETQQ
Ga0211497_100057767	F044198	AGGAG	MQPKNVPCHIRIKVEPTQKQRGRACRLHGKDFKSIADAARHWKVDYSWAAEQVNRGMNRENFPKKYRSKHG