NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211618_10047628

Scaffold Ga0211618_10047628


Overview

Basic Information
Taxon OID3300020393 Open in IMG/M
Scaffold IDGa0211618_10047628 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1658
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006662Metagenome / Metatranscriptome367Y
F023878Metagenome / Metatranscriptome208Y
F036739Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211618_100476281F006662N/AEVLQVRTLTAKEYEVIKQIYDSTDEIEANLSFQFGIQNDTYYQLFHSYTEGNQ
Ga0211618_100476283F036739AGGAMITPLSPLVVNKNRRASFPQKVTQIVEKYVKKYIKTLINVFLNITKRFISSLKSVINSKY
Ga0211618_100476286F023878GGAMELFIIIGGCYALYTVGMAIATEIDYRAINRNRPK

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