NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211618_10017009

Scaffold Ga0211618_10017009


Overview

Basic Information
Taxon OID3300020393 Open in IMG/M
Scaffold IDGa0211618_10017009 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3257
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F023877Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0211618_1001700911F023877GGAGMTLKQQIKEYVDDHYTHFGFYPYDVEVDGQVYSYGGYWAILEDDRFD
Ga0211618_100170098F001419N/AMSINYEEILKCYEGVTEEHANTSFEFGIQNDVYYQLFYSYTEETDS

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