Scaffold Ga0211618_10016209

Overview

Basic Information

• Taxon OID: 3300020393
• Scaffold ID: Ga0211618_10016209
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3360
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F081221	Metagenome	114	N
F087026	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211618_100162091	F087026	AGGAGG	MVRGKWKAGDLVQVESTQKTGWGDECHSHLVLVLGRYKQKHRRTSPKPHFPLSAYLAENSSKEDVIYEVLRDDGKYLKLGLKDYASPGVRLTNRL
Ga0211618_100162092	F081221	AGGAGG	MLAALYNIAILVTGFAAVICASLTAVALINLLSSSMLTYRDDKLLLAWSLPSGLFFAGLLMVMLGWT
Ga0211618_100162095	F026851	AGGAG	MTPKEAQRFTKLLHNTDDMTPLEKAEVGRLKTAYLSAVIQETEAYVAAKEAYEDAKKHLDVRDPGEREVLMTLLKSMRDGEKNVLIIASELETHFGISA
Ga0211618_100162097	F021526	GGAG	MRYFSIDYRSPPSGMGQIIDTTKPKKKGNQYNYILVTYSGCGLEQDPSYVLTAHFSSQEADKQGWCGPILEDIINYLRSQGVTHVQDGELAYEYEGGNENDFNGLFTLDRWEEIMMSYL