Scaffold Ga0211618_10012862

Overview

Basic Information

• Taxon OID: 3300020393
• Scaffold ID: Ga0211618_10012862
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3908
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F012779	Metagenome / Metatranscriptome	277	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211618_100128623	F012779	AGGA	MTEEQNNSDTADKNEKNWKEMREKLELYEGKIAEFEAKERSTVFNQAGLDTSKGVGKAVEMMFEGELTVDNIRQYATEEFGVDFGQEGGLQDTVQEVEKSQERLDNIQKNSVVDLYDTDVISQVREIEKSGNIRNSIAAKLSVIEEAKKNSK
Ga0211618_100128625	F003693	AGG	MISSKTALIDVSADNSNSLGVKTEGMLLCGIQFPSAMTGTSVTFDFALDNSTWVDVLETDGSAVSYSISAGDVVRVDPSGWAFASNGYIRLTSNGSEAADRKIILHFRHS
Ga0211618_100128626	F092017	AGGAG	MGMLLILKEGRNLNIENIPDQPLEPSFPIVDPNDNANDGWFALGAFGQAIFAAELVEEGA