Scaffold Ga0211618_10011995

Overview

Basic Information

• Taxon OID: 3300020393
• Scaffold ID: Ga0211618_10011995
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4087
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F007002	Metagenome	360	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211618_100119955	F007002	N/A	MNDTYLTILNSYGDIVELNYQFDVSSIIDELKSVDKWIDGTNNKKGLTLTGSVDDLELTQRNDSSINDNLKKCPSLLDFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQHGSFAMVDDIYHILMGIYINPHNFKVVTNLLPNCIDHE
Ga0211618_100119956	F004144	N/A	MRNIFKESKYHLEIETGWTYWFHLKHSIVNSYKLIKISFKSLVHGLLPFMWKSDAPKGVIILYHEIMKIQHIQKLDKLRKYPKNERYLSNDTE