Scaffold Ga0211666_10050195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211666_10050195

Scaffold Ga0211666_10050195

Overview

Basic Information
Taxon OID	3300020392 Open in IMG/M
Scaffold ID	Ga0211666_10050195 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1788
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9488	Long. (^o)	-96.0293	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052545	Metagenome / Metatranscriptome	142	Y
F080495	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211666_100501955	F052545	AGGA	MEKARVWAILFRMSTESSLMIRTPFDPKTFKNSPDDQLDAGAWCLGRMGGSWIPAMFICGTQSEAEGIKEELLERMHRDEE
Ga0211666_100501957	F080495	AGGA	MKEALILALAFLAGCMMIGCRQPVRNYRITTGSPDLWASQPKQKVEFTVEWKQ

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