Scaffold Ga0211666_10017773

Overview

Basic Information

• Taxon OID: 3300020392
• Scaffold ID: Ga0211666_10017773
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014744	Metagenome / Metatranscriptome	260	Y
F045687	Metagenome / Metatranscriptome	152	Y
F101865	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211666_1001777311	F045687	AGGAGG	MIRLIDITDDDIKNGVQCDNNKCAIARALKREYKTDNISVYIPDDISTPVLLVNRKELNIRHENDVLDFIDCYDYMGADDYHPEPKPFTLEVVEXKS
Ga0211666_1001777315	F014744	AGGAG	MYNNLNQKLSELQSGNYLIKVKSIGDRRPNKYYSKEYFVTIKYQVTDLNNPKRKFGVIVSGMGSKPIELNVDRELLPTNYFIWENFDEVLFERLSKTQREINEEGYYPKDRDTGRVVA
Ga0211666_100177738	F101865	AGGAGG	MKIKDLIKELKYYDEETDFAIKLVVDPHDSEKDILLNWIGEIDTSLLDQSYIEFGVEKXLRYL