Scaffold Ga0211666_10017707

Overview

Basic Information

• Taxon OID: 3300020392
• Scaffold ID: Ga0211666_10017707
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3387
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y
F059457	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211666_100177072	F059457	GAGG	MIDEPTKIGNTELYTVRVLNISVAQYYGVLKEYTEILVKAREVQKEQLAKEGYQAELKLYYGIRKNLNDLVREKLKVKK
Ga0211666_100177073	F042374	GGAG	MKQSIKKSFFMLSIMGALSSCSSMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVEDQTNTGVDIGKTIYNNLRWKVLWLSPKMNTRKDFINRCLEGRGYNVINK
Ga0211666_100177076	F005751	AGGAG	MSDIYTIEFDPSKLSYQQESLGLKFADYDTAVELMKKEEKMIIAELTIYFSKDGKYKNMTELNGLIYSDNRFKEFFDRYQKTLKERNQAKIRFETFKAFRDDLRTKVVNERELAKNL