NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10003674

Scaffold Ga0211666_10003674


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10003674 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8953
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018376Metagenome / Metatranscriptome235Y
F024116Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0211666_1000367412F024116GGALNEDWKDYLSIILFLIVILGGLVILGSCDGGWSIAGYEV
Ga0211666_1000367413F018376AGGAMSEEVTNRWSDDYSGRWSHRAYMIVPVADIDSADAPTDSNTVVQIKAWMDSYGYEYTSDMNKSELLGAIPVSNAFIANAIQSSKETLRKNNGETGDSSKALLKFACDNDPDNDPAMFSSYDKYSHSQIMTELSGTEWTSDIE

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