Scaffold Ga0211675_10127072

Overview

Basic Information

• Taxon OID: 3300020391
• Scaffold ID: Ga0211675_10127072
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1150
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_096
• Coordinates
  • Lat. (^o): -29.6749
  • Long. (^o): -101.2137
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032821	Metagenome	179	N
F046989	Metagenome	150	N
F066702	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_101270721	F032821	AGGA	MIEIKLDLYDLMAASQTGLLRVYESLRLKQEWGHNYKGTVNDQIAKSISGACAELAVCRYLDTAFNFHVNHGSNPDIIWHDTRLQVRSQLPKKHNSLIIRPKGSKQNEIYVLVIDKTPVFELQGFVNSTHVLGTEHFLTNFGITDRPMVHSLGIEKLTPIKFLK
Ga0211675_101270722	F046989	GAGG	MKTFLFLVLLTQQGLHYEKIQIKNYTNCDDAYNKKAIWYDNPKFKDGNGQLWGFHIYKNKPIVASFCKDQDGNWLL
Ga0211675_101270724	F066702	N/A	MILKEIKYRNFKVKIVKLARKDAKKENIYGYYDTDKSIIAIQEDLKKITLLDTLLHEIAHMIAHKSSIRLKNLGEEGVALFIGSEFSKIFLQNPKLITFIKRCTK