Scaffold Ga0211675_10023349

Overview

Basic Information

• Taxon OID: 3300020391
• Scaffold ID: Ga0211675_10023349
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3181
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_096
• Coordinates
  • Lat. (^o): -29.6749
  • Long. (^o): -101.2137
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005026	Metagenome / Metatranscriptome	414	Y
F018706	Metagenome	233	Y
F026871	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_100233494	F026871	GGAG	MFAGVGVALSILAFFIKRNKAEIEKLNERFRQVEISDAGQSKDLEHLTKLAEDRREDVKNLFKRMEDK
Ga0211675_100233495	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARQQKYEMEMARECRNNEFAVQFQASLNSGPGGAFTRATRRMLALIGMFTLSFITCITTIYPSIPLVSTTNITGEGRREFLFGLLSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR
Ga0211675_100233496	F018706	AGGAGG	MFDRAAILGMSGTAASLGLSAYDSLIGIAAGVVTLIYMSVKLYQEIKKK