NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211675_10004345

Scaffold Ga0211675_10004345


Overview

Basic Information
Taxon OID3300020391 Open in IMG/M
Scaffold IDGa0211675_10004345 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8386
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_096
CoordinatesLat. (o)-29.6749Long. (o)-101.2137Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003197Metagenome / Metatranscriptome501Y
F099417Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211675_1000434513F099417AGGAGMINQKEIDLLVYGHIYEWVKPKVWNKNINDVDWKDVKDTVYLDALGCKTAWWKNYDHFTEIFNDVKNGIINDADVNVFDNGV
Ga0211675_1000434514F003197GGAGMDYNDYLNKLQNDYVFFKDMLKSLENKKKTPGNGFAKMKCKEKIEELEKIFNEIDYAAQVTYD

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