Scaffold Ga0211675_10004092

Overview

Basic Information

• Taxon OID: 3300020391
• Scaffold ID: Ga0211675_10004092
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8668
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_096
• Coordinates
  • Lat. (^o): -29.6749
  • Long. (^o): -101.2137
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012507	Metagenome	280	Y
F016324	Metagenome	248	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_1000409211	F079212	AGGA	MCMTPEEELIKECIESHRRMIKYHRAQIIELSRRIIKTEREMQSFEFDFINKSGRPY
Ga0211675_1000409227	F016324	GGA	MRHRIPPRMTPPKIGDLVRLSGPGGMGRVFNRTHGVGLVVSIVRPTDRRIRYQVKWLKTDERMDFHEEDLIVVSDVD
Ga0211675_1000409228	F012507	GAGG	LSQTWTDSIEVGDLVFAIRDGKPAVVLDKEETAQAKYGDIANKRWQFKLHIDGEQGWLDEVRLRTQYKIP
Ga0211675_100040925	F041168	GGA	MKQAKVRNRTVGFFRKDAETPFINLNMFETVKDATGIPHYWRDKEGNVSQFWHAGIIPKGTAVMCKHRERGMKHTFWIVTDPESELAGKMFVIGHTFKDRIENEDERFEYSNISPTLKYSILAEKPLTK
Ga0211675_100040928	F030886	GAG	MSYHGFPPPEMYEKTGMGVVNPLIRIEQKLKKIRDILDALPEDSDMTASDLKIKLMETLD