Scaffold Ga0211675_10003364

Overview

Basic Information

• Taxon OID: 3300020391
• Scaffold ID: Ga0211675_10003364
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9641
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_096
• Coordinates
  • Lat. (^o): -29.6749
  • Long. (^o): -101.2137
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F089431	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_1000336411	F004144	N/A	MIQWFRNAIYHLKVETGWGYFYHLWHSLKNSWTLLVIAFKSTVHGLFPWIWKADAPKGVIRIYHQIMRIEHIEKMDKLRKLPKNERYKSNKPIDPVE
Ga0211675_100033649	F089431	N/A	MKEKTDKNWYSGEKIDDLVDAVKKADHKKDEGVTQEDEAYEKVMYSDEQMEKHKKMDNIFKVDGVPSRWEHNKLRANWHFDPFADPNEETFVIPCRFEGDFEPAVRYAVEHSKEMTIGNYRNRNLSKQDADLHDGEIQDVLNSSGKEDVSSMYHDMVVRSRFKEGEDNYYAQRNPAPEYEILLRIIDTLEVEVHQSRMHIQKLGQVTPVHIDQQMRYARPGWRKVWTDAGADKNPLKLRRFLVHLQDWDYGHVWQFGNTYHQGYKAGTCITYDWCNMPHGTANFGFTPRVTFQFTGFVGDKVQHMIDNPDPNRIIKV