NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211675_10002345

Scaffold Ga0211675_10002345


Overview

Basic Information
Taxon OID3300020391 Open in IMG/M
Scaffold IDGa0211675_10002345 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11815
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_096
CoordinatesLat. (o)-29.6749Long. (o)-101.2137Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019755Metagenome / Metatranscriptome228Y
F028822Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211675_1000234510F028822GAGGMAIFTNKKHTSKLFKIVENAKKSDPMISKGEGKKQSKQTSAGDRKYDPMLSMRSNQGLEIQDTVDMMIAKAIK
Ga0211675_100023459F019755N/AMAKKFSLNDPNDQSSVKTNLIVDEAENKFHIENYQDPATIKEIVDANKVAQNEGAYKLNALKNEKGYRVARLPNIVVHQLAKQGIVNYNGKVLDKTRFFRWLNDSDNKHFRIYTGNL

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