Scaffold Ga0211675

Basic Information
Taxon OID	3300020391 Open in IMG/M
Scaffold ID	Ga0211675_10000003 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020391 Open in IMG/M

Scaffold ID

Ga0211675_10000003 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	184324
Total Scaffold Genes	234 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (26.07%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

184324

Total Scaffold Genes

234 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (26.07%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_096
Coordinates	Lat. (^o)	-29.6749	Long. (^o)	-101.2137	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_096

Coordinates

Lat. (^o)

-29.6749

Long. (^o)

-101.2137

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023615	Metagenome / Metatranscriptome	209	Y
F029108	Metagenome / Metatranscriptome	189	Y
F035765	Metagenome	171	Y
F042280	Metagenome / Metatranscriptome	158	Y
F066686	Metagenome / Metatranscriptome	126	Y
F082523	Metagenome	113	Y
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_10000003100	F082523	N/A	MSGEAHSVFFRRTNKTKESNSQLCKIFERIILASPVKKHMKFYPDHLGQVELYQKGGENVPKWMEKDLRFNGTFELHISTYESWYEDGDIYESFDRADSFVSLAKKFAEQYNLNYYPRGVYDLEKESEKKDLTLFQK
Ga0211675_10000003114	F042280	N/A	MKITNQWDESFEIEVGDWVGFKCDIEQEGIVKSIQRSRHTLIVENPHGFHGDYIGGDTEALLAFDDVWEIAGFLGS
Ga0211675_10000003120	F092065	N/A	MQEIINKIYERMEFCANAHTNDQAEEQAYILEITCLNEILDQIETFPWESEEVN
Ga0211675_10000003128	F029108	N/A	MKQINTNKYLVGKKKLGKGKVGARGGVGVPTGAFGGKSKFNKKKLDKSE
Ga0211675_10000003136	F066686	N/A	MKELQDIINDLQARLAIVGGGRIIITSDDVSISLGEEHENFEVQEKSSCDSLTNPDVEMYNQMWGQ
Ga0211675_1000000378	F035765	AGG	MINGMIKDILAYFQSPVWTEEDEDLKLEIFSSIIVQNKCWYCGVGELKDNDHFIPTNGRLFDPPMFGLEHEGNIIPSCKICNANKSNKHPLLWLKKGRVTKGKEFQFPTKRIECFELFFDIFKDKLIADSELTNIIIEQAIPKCEKQTKELANFEEWIKL
Ga0211675_1000000393	F023615	AGAAG	MNRFDLEEDISNLNQIGEDIETMIYAIGDSANKYSEDQLLNMLIGIKQLHDTRYEKMWATFEHLVKNGTISNNKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211675_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences