NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10242017

Scaffold Ga0211680_10242017


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10242017 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005148Metagenome / Metatranscriptome410Y
F009404Metagenome / Metatranscriptome318Y
F060967Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211680_102420172F005148AGGAGLKQKKYEEYLKRTLPESEEVECKKCGIKFVDDFNLVCLGALDMCLLCANRNLDKETIKEKYHE
Ga0211680_102420173F009404AGGAGMSDEPETIQPKGESLVKHCPICGVEFDETVLTNRWLKCDSCETVFQIKVKSGE
Ga0211680_102420174F060967GGAGMNKSRVARDLWRKVFNDNLINLSDGDARKGVVRDFL

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