Scaffold Ga0211680_10036998

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10036998
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2336
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F005400	Metagenome / Metatranscriptome	402	Y
F008692	Metagenome / Metatranscriptome	329	Y
F018198	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_100369981	F005400	AGAAG	MTHEWKCTDAHPNSPSLGKNYKGFKDLTHTNMCYRCDYCDQGYQNIYWLRQLAIEYFICDRCQKYYRLTAKDMLELQYVQNRQEWKDADCWPNKGFFPYPIGFDT
Ga0211680_100369982	F018198	AGGAG	MAEKNRVQIFINEKEMLYSHQNMARAIKSFLPYLTNDDLDELIETFATLKDHRRAKEDLARFEAREKSIQKNRHDT
Ga0211680_100369985	F002348	GGA	MKPNEKWVKYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYLGIRIFNFSTFEEYKEKRMKLLNKLLK
Ga0211680_100369986	F008692	N/A	MILENEMIKKRKQTKKEMYIPTSEEEFQADLDVQDMRYLQYCREQEEMYNDPVMNWSGLR