Scaffold Ga0211680_10034423

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10034423
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2451
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007121	Metagenome / Metatranscriptome	357	Y
F011446	Metagenome / Metatranscriptome	291	Y
F025588	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_100344232	F025588	GAGG	MKSYTKFKQELNEDGMLHGEPGTENPSTTIHYGPNDPEIVRTASNTMTVPKYRLSEDEKGCNHTCTHWRDSSYCAEYYFKCDATYICDSWKNSGI
Ga0211680_100344233	F011446	AGGAG	MEEMIVGWASGQTWWHYVATIVVIANGITMTLKDRYAENIPILGKIWPILNWLSLNIANNKNDDK
Ga0211680_100344236	F007121	N/A	MFKVILLTIFLLFGVATPAQGDWYMLESPRQGDWYIVFEDSLQEPTLDKLIEWVPEEVPRTVSFYFDTDEDGMFDLKIAYSLIEAYACNQNCVHRIIDNGDHWILPAPGVNYFVIKRWTYWKYANDEEWRGINKTH