Scaffold Ga0211680_10022835

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10022835
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3182
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F042643	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_100228352	F002667	N/A	MEEILSSAIILVACISAGISCMFIARSRSVINKHSRQRIKDFENDIKYLADRKKEGEAEHALEIKRLNGFVNRLKNGNSVTDADMKDSGLGDVIMQLIPNKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTSNKQTQVGNQSEAVQTL
Ga0211680_100228355	F042643	N/A	MAFKLKTGKTINKVLAGAGVVALLGAVGSMVAPGFMNSTMGKAVEGIAAYSVGGLESVIGAVGTMFIGGRTSSTSLDNTLTESL
Ga0211680_100228357	F017252	N/A	MPQVIQGYHVNIKPSDPTAESTYVSDIIPAGAAATTIHYPTQYRSYAISAAIKNQDGTNACTFSVNGQPAISLSAGADQNINNQSIVSIQVTPGAAGTVDILAQVSPIYVSTEAERFRTARG