Scaffold Ga0211680_10018355

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10018355
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3646
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024128	Metagenome	207	Y
F047304	Metagenome / Metatranscriptome	150	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_100183552	F047304	GAGG	MSEIKPQYYGAVITTNMVTEKELKKLKKRAGGFVKCPTRKAQGSKNSRWGQCE
Ga0211680_100183555	F105352	GAGG	MNTYKLEIPRPQFDRIADAFEHQVFDVNGFDFDKDTIIFTIKEPQRVWFEKYAIQKVIKWKGGSKKNPYKWICQMFLPHEIKKYLVK
Ga0211680_100183558	F024128	GGAG	MKNYTERGTASLSDNIKYINDAVSHLEINRFCGTKDTMGYQVVCKAITMNVVTGKKAFVVWAVQEGYDELEVIVQKAKDELRNRIVMGAPVLQCAAPDDDIRNLVEY