Scaffold Ga0211680_10015491

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10015491
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4060
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y
F018265	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_1001549110	F005400	GGA	MSEQPQLGKNYNGFKDLTHTNMCYRCDYCDQPYQNIYWLRQLAIEYFICDNCKEYYKLTVEDLFKLQYVQNRQEWKDANSSARFFPYPIGFDE
Ga0211680_100154912	F018265	GAG	MSMELHTLRAVKITQNIFELRKVNREIVEVSKIMELLERRKSMLENSF
Ga0211680_100154918	F018198	N/A	MEEENRVQIYINKKEIKYSHQNIVATINSFLPYLTNDDLDEMIKTLSTLKEHRRQKEYLALLEAREKSIQSNRHDT
Ga0211680_100154919	F008155	N/A	MITSEHQHLATLVYAKALRKQIEERVEAKYLKRIEHLVGANNELMYELEQRELELVTIESELVTVEKDVMEGEYE