Scaffold Ga0211680_10011956

Overview

Basic Information

• Taxon OID: 3300020389
• Scaffold ID: Ga0211680_10011956
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4758
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022907	Metagenome / Metatranscriptome	212	Y
F031665	Metagenome / Metatranscriptome	182	Y
F037425	Metagenome / Metatranscriptome	168	Y
F055215	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211680_1001195614	F037425	N/A	YQGIIRNLLNNVDICNRRYVEEGEGGYMVQRDVYIKEIEKLKTFIKKEEIRLGYYKE
Ga0211680_100119564	F022907	GAG	VANESDYNPMIEQNVGDIGGDFTKSITIEAPNETDRVGDIEAGIDAIHTIFQYIPELVFVSIYGLIMFAAVLIISKKIKG
Ga0211680_100119565	F031665	N/A	MEDQITSWLEPIIGLGITAIIALWFKEAVGDVVASIRWKMKPGFEPGDIVYLDGEKATIVSIGLRETIFEIDNGRGKVWRYIYNKRIATHKLEKIISGK
Ga0211680_100119567	F055215	GAG	MKIKDILQVPNIEIGDEILVGKFKNRKATVTGFTTDENNQPVLKTTKGDQKLFKPRIVKLMDK