Scaffold Ga0211678_10391230

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211678_10391230

Scaffold Ga0211678_10391230

Overview

Basic Information
Taxon OID	3300020388 Open in IMG/M
Scaffold ID	Ga0211678_10391230 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	553
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.8785	Long. (^o)	-73.0369	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012625	Metagenome	279	Y
F092859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_103912301	F092859	N/A	DTTTISENSEDKDTTVTIPLEFTAKLGVPQELIDEGNRALNRFKWTMFALVGGYIALNVYVAYLQVSS
Ga0211678_103912302	F012625	GAG	MDPLHNKTISVGDLVKEHTYSSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKVIDGEAYPNYLQDYIQGKRW

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