Scaffold Ga0211678_10254861

Overview

Basic Information

• Taxon OID: 3300020388
• Scaffold ID: Ga0211678_10254861
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 723
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.8785
  • Long. (^o): -73.0369
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_102548611	F002249	N/A	FMRYGKKYKSYPYTIPINHKALQHTKIKELQVRMMKWVSWYKDEKIRDRTIDKDKWQHRFTFTLRCQKRAGELNKQELEMLNRLWKVYDTTTDT
Ga0211678_102548612	F013522	GGA	MIQQQILKRIHELSKLCEETEPTNKELMYTDKLFTQDLIDVDKMYLTVKNNTYSREEIIDIMKECNWIWKKRIKVKEIGWDKYNNIDRKIEESLRANRKIEAIKTYRRHKIDNDGDCSLKEAKEYIDKLVIRMGLD