Scaffold Ga0211678_10240547

Overview

Basic Information

• Taxon OID: 3300020388
• Scaffold ID: Ga0211678_10240547
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 749
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.8785
  • Long. (^o): -73.0369
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_102405472	F003531	GAGG	MKRKKWSDDETELARQLLKKHSYATVGRMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKEKNIYVDN
Ga0211678_102405473	F025411	N/A	MSITRVYRDRDNNIKVEKFSFEEVKKDLTKFFSHDNGISNRKNKNETKRLIKHSTDS
Ga0211678_102405474	F005656	N/A	MKLKDLLNIQQIVEKRAIPSDVLEFDSTHYSRSKDMTVDILDLHLTHAIRILNNYLDNNVYPEYPDRQQINDTLNVIKDNVDD