Scaffold Ga0211678_10104607

Overview

Basic Information

• Taxon OID: 3300020388
• Scaffold ID: Ga0211678_10104607
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1251
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.8785
  • Long. (^o): -73.0369
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039870	Metagenome	163	Y
F061353	Metagenome	132	N
F087129	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_101046072	F061353	GGAG	VDKAKDDFESASDEMDALLDRFEAAGYNSGAAMGGAMQAIIFRMAIGAPDAATALGFMGSCMSTAALMATSPDETEH
Ga0211678_101046073	F087129	GGAG	MTFNANERTRYIAKCAGVDYDDLITHQDTNPAVTMYLDDFKVIENELRAAYIVGKATKTAAHGSSGLIDSLEHWAKCFRDGTLDDSNAEEIAYLLEDRAHDLRARGEDNA
Ga0211678_101046075	F039870	GGAG	MPKFKVYVTVYHRIDVEASNEEEAKELATEEIWDDHIKDVIIDVEEMDDTNDE