Scaffold Ga0211678_10063610

Overview

Basic Information

• Taxon OID: 3300020388
• Scaffold ID: Ga0211678_10063610
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.8785
  • Long. (^o): -73.0369
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F008022	Metagenome	340	Y
F022645	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_100636101	F022645	N/A	MKDTNEIEKQLQRKADKYIEQKAKEMFEIHREIAMYLGGKLPNYIDYITDFSDYSKDLVANRGKYFTSSSPSSMELKFQKDLAKNYKHKLVAKYTKELIMKLDIFE
Ga0211678_100636102	F004523	GGA	MSTEIRSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLDPKPLRFATYSTGYVRNISESNSSCYQINKTKKRPAGTDGYHYETVERIMIPHWEDRLIYLAKFIIKNYYQKPTYLISDYTMDIIKSQYTQAVKYRNLTECDKIQADVNATHSLPFAVDVNVDDIKVIINGHRYNLS
Ga0211678_100636104	F008022	N/A	MTKNELEIKLETLQKLLEEQNTSANAYRDQIQELQKQLKDINKPKLTPLQFDELHEAIEQAVGSFDFDACDNYETDFHIDYDNRIAIESMSFHNADELVRIINSNISELFAEADAPEDDNQLNQD