Scaffold Ga0211678_10027227

Overview

Basic Information

• Taxon OID: 3300020388
• Scaffold ID: Ga0211678_10027227
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2873
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.8785
  • Long. (^o): -73.0369
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035078	Metagenome	173	Y
F035487	Metagenome	172	Y
F035967	Metagenome	171	Y
F047913	Metagenome	149	Y
F062181	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211678_1002722712	F047913	GGAGG	VKVGDLLKHNGNHSLWLLLELSGGFPFEGYSLLALNPKTGYKMWADPKTFEVVSKCQENVKSDKLSLQSPSQRVTL
Ga0211678_1002722713	F035487	AGG	MKGLKIGDTITLKALGSATKRTKNRIHNRGKSGFKVRQAPQRAKFTDNRGVDWIQLDAIDNDWSGWLPMDEIEITSATIK
Ga0211678_100272273	F035967	GGAGG	MKVGDLVKMKFGYSPVGVVTDIGYSVDHIVDVDPPQMASIVWPDIGKSREKAADLEVISESR
Ga0211678_100272276	F062181	GGA	MKVGDLVKLKYPRKPQHGGSGVIVENDNTFVSLPNSPNWFRVIWTDSQTSLTGESWLKEQQLEVISERTSN
Ga0211678_100272277	F035078	GAGG	VKEQATKLEIFRSYLLDRVKESRVGAIDLNPDGDPTFEVMPELQNYTWVIDLAKREGVAATPTSGSAGARLTITEEKTNE