NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211590_10163893

Scaffold Ga0211590_10163893


Overview

Basic Information
Taxon OID3300020387 Open in IMG/M
Scaffold IDGa0211590_10163893 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000405 (ERX556119-ERR599023)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5123Long. (o)37.8586Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005266Metagenome / Metatranscriptome406Y
F029777Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0211590_101638931F029777N/AGKDKWCEVDHLMLTFYIKARTTDTREYLEDMINRDVVKLIKGPRYYDSAKVYCMIDMDHPEDESIYDIIKVPKAKRPAPYNVEGNEGDITYHVTLHVQECNNSDLAIYEDLTGGGNYFDLSGKNLEIKEKEMA
Ga0211590_101638932F005266AGGAGMSVHIRYRFLKEKGDYLKDENMTRGYTCVESYTEYPFHKVLNEFYKDFKGRGVQIFNIWRTPAGEANYKMEEEERRRG
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