Basic Information | |
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Taxon OID | 3300020385 Open in IMG/M |
Scaffold ID | Ga0211677_10157566 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 960 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_093 | |||||||
Coordinates | Lat. (o) | -33.832 | Long. (o) | -73.0366 | Alt. (m) | Depth (m) | 35 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030557 | Metagenome | 185 | N |
F052887 | Metagenome | 142 | N |
F089524 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211677_101575661 | F089524 | N/A | GKADNGPLESLSVRRIAPTKGDLQHIDLDKWLQYLEFKVQEHSKVCQSKDYLLKRITEDNEHNKNFVRRNNYVKVLSNRS |
Ga0211677_101575662 | F030557 | AGGAGG | MSKFYLTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLSKKEVEELLIKLSQIKVNDLPLISMKQEKYISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIKDAEQIKIRSYLYPNLDQWELLEKLEGLPTEEFNKVKPEQLQYPWILKKCQR |
Ga0211677_101575663 | F052887 | GGA | MSKIEHEINQYLFVRSNIINILADAAIAERFIRAPSNRRCPSMYQILETYYDKKDWGYHAEAKLKLRGTPKQMQNYDTALDLL |
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