Scaffold Ga0211677_10129516

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10129516
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021557	Metagenome	218	N
F054939	Metagenome	139	Y
F064806	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_101295161	F054939	N/A	SMSTYTFTFITVVCMYLAYLWGRKLTKGEIAAEVAEGTLNRLEKEGFIKYIVNKKTGEKEFKRFK
Ga0211677_101295162	F021557	GAGG	MRVIICALLLTSNAIACDYKSNDKVVFEGNIESVRLIDKKVYPYVDDTRICSIEIESRIEGEWYPSKSKYIFGSEMSEDTACSLAENRAKVKVMREKLPEKLTSKRNLSCNLTTVRNSCKIIYMNVEMPMVGTQRVKLKTCEE
Ga0211677_101295163	F064806	GAG	MFKFIFGVIVGFMIFKFDWIDSMSDAINDYGIKEAIIEKLQDEVDIDNLNNGGEIE