Scaffold Ga0211677_10098173

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211677_10098173

Scaffold Ga0211677_10098173

Overview

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10098173 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1283
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012041	Metagenome	284	Y
F087898	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_100981732	F087898	AGGA	MKADILFRILMILTGFILAMLGAITFLHAGDHKVLGLLISFAGVMSMFAALPDNA
Ga0211677_100981735	F012041	GAGG	MTKYKVSLSVDKNWIDRFDLTFEADSEHEAETMAMIEVKQNLSDYITAYADDESEE

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