Scaffold Ga0211677_10054076

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211677_10054076

Scaffold Ga0211677_10054076

Overview

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10054076 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1841
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052869	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_100540761	F052869	GGAG	MNKLVKIVILTLIGTGCFGTGLYYSTIRFNQTLDNIKSEYDVISEQVDVFVDLSNPKTIRFYTTELRRLLDDIKFLHVLIESGQIADEKLDEYLASKEGNVDGIMKRLDGITSEVDSMLTSSHDHMHLMVEELQDEVTSQLINSDVTSKVDSLNKQITSLENKLDDVNKVID

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