NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10027157

Scaffold Ga0211677_10027157


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10027157 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2790
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040347Metagenome / Metatranscriptome162N
F041247Metagenome / Metatranscriptome160N
F061913Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_100271573F061913GGAGMVEQGNFFVKCHNIYYNQQWLIDVLESLKPSDWVDGTSVTGVTWTVNECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAILFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRTLHAVPTPIDDEEERVVFSVNIHTHPTEMYKRAIDGTWLNKNTENIGVSND
Ga0211677_100271574F041247AGGAGMTDFYSVEAKTLKFDKELIVDFYNTVDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYKHLINDINVDVDEKRIYFSRIHPGGIPNHWDFENFTKLQFPVICDEPDNDWSKTPILMIDQFDQIVERVEHTDDTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYENTLFTNNKAFWSMA
Ga0211677_100271575F040347GGAGMNRWDITVKQSNYDFNPFRESDHGKYFKTVTNIYEDWSKELEYANKQQYDFYWPSPVKPGGDHFDYEYENKLVEDWGIPKDFVIYRMWSATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERQDQSSTRATDPEWGRVFVMLEDWKPGH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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