Scaffold Ga0211677

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10012920 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020385 Open in IMG/M

Scaffold ID

Ga0211677_10012920 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4455
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4455

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)	Depth (m)	35
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_093

Coordinates

Lat. (^o)

-33.832

Long. (^o)

-73.0366

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F051922	Metagenome / Metatranscriptome	143	N
F065800	Metagenome / Metatranscriptome	127	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1001292010	F080086	N/A	MTNITAMEVSIEALANECAKHDFAFMENPWRHRHWSNEYDRRARIFTMLERLGHSSKAIEVYNTYAPAFAKRPLRSKYY
Ga0211677_1001292012	F070126	N/A	MRIYQLYTYCREVIDKYPALRDDVMRHFALAEMECEDDASSEEHEVELSLTDIDDLVADYEMQMGLQK
Ga0211677_100129206	F065800	N/A	METKFIPTDPEELTGFDSILKEFNTINDSAYVFNSHYSSNYDVYVGEESTADGYSIWVINVDGEGPILGENVYYYQPSAYDIFNHLGGGWRDDLVVYTEIELHDIEEYMIGELCTNYENYLNELEDAK
Ga0211677_100129207	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPIDTNTMMRGDSNLIQPQNEVI
Ga0211677_100129208	F014147	N/A	MTTIKNTFEQQLHEKFGVNVMSMEGIYSAILVDGTHGTDYVSYHDTSPGWVFGVHPKLQAFIDAHGWECEWRNSEVLDLHPGHDWTSDFSEAQLVSHWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAANKHGRYDFDDKWLTLDGYGNPMSFNDLTQYIDVPELEEYLIAHALI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211677_10012920

Overview

Ecosystem & Geography

Associated Families

Sequences