Scaffold Ga0211677

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10010049 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020385 Open in IMG/M

Scaffold ID

Ga0211677_10010049 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5242
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (35.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5242

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (35.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)	Depth (m)	35
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_093

Coordinates

Lat. (^o)

-33.832

Long. (^o)

-73.0366

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F026870	Metagenome / Metatranscriptome	196	N
F075429	Metagenome	119	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_100100491	F026870	N/A	QFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGDDPFSEG
Ga0211677_1001004910	F020110	N/A	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEEASEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSASPFA
Ga0211677_1001004913	F019754	AGG	MNNSDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAELNPNLK
Ga0211677_100100493	F075429	GAG	MADTTELPETVTVFLEDGSVAVTVGHLTGWVSSAHLVEPKANQLMRAWLEQKSKALLNENYDGAA
Ga0211677_100100496	F098218	GGAGG	MTSFSSWSKRPEEIRAAAKTRAIAALHKKHSKGLTALERAYLHALKTGRLDLDD
Ga0211677_100100498	F022313	N/A	MTYHYQPQQEYESTKLERILQELQAIIDRENKRHMMDEQLSHSMRNLLEDEIIPMLEAEVNYDPTPQTSYDFFHQ
Ga0211677_100100499	F023484	N/A	MNINTKAGELLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCNPDQVLDADQVAKCKNFIRNHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211677_10010049

Overview

Ecosystem & Geography

Associated Families

Sequences