Scaffold Ga0211677_10005158

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10005158
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8086
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F049999	Metagenome	146	N
F062173	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000515816	F062173	N/A	MEIYTYDSKIIGPNGYKELMVAVLNDKGNPIDSCCHKLDSPDIHDLTTAETGAHEFGVKGWILDPADQYQGYAVKK
Ga0211677_100051582	F016342	AGG	MRSKDYHALKDEFLRKSVENKEIIKQSSQGNFGMYDVLPANCARTVSEACDEFFKSRNIRYGSAWFHDRNDRKKKIQQAKDERNTNS
Ga0211677_100051584	F004688	N/A	MIEKYTMPCIHMNGSDENSLRRQYNDLFEAVSEAQVKLLYDTDFHERDYYPLGGEAWDKAFKEREEVKEAINTVYQYAKQHMHYLDYGKEPLPDED
Ga0211677_100051585	F049999	N/A	MERSHCQMKIKNYLVIIEEVNLLQFKVEAPSEAEAIDLVEAGEAGDPIDQKAIEFNCLSVKEHVK