NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10003826

Scaffold Ga0211677_10003826


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10003826 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9782
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019760Metagenome / Metatranscriptome228Y
F024891Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0211677_100038263F024891N/AMIIVEENTTPQITMYLRDFTTESFEMEIISEDQRIEKVDTAISGSYDDFRKVLTFSYDVSALVAESFYVIKIWEVGKIKLLSQDKMYILPSGSSVGTYQPKLATTEKTMDNEFKIYGE
Ga0211677_100038266F019760N/AMGEKGYGAIYGSTWWGSGDAFTNTIGWGSAMFYILDPAQFQQRALEDGATMEAFECVSKSLRRFPQADRGRQLMDAYDSRVELAGGDTEARTCTINELNELI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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